Advance plant and animal breeding programs with CleanPlex® high-uniformity targeted amplicon sequencing completed in approximately 3 hours. CleanPlex panels are ideal for GBS, marker assisted selection l, CRISPR on and off target validation , and scalable screening pipelines that support both research and production environments.
Applications Most Used in AgBio
CRISPR-QC Panel (Plants/Animals)
Verify on-target CRISPR edits and efficiently screen predicted off-target sites. Amplicon counts are tunable from 50 to more than 5,000, with limits of detection down to ~0.5%. Illumina compatibility makes it easy to integrate into existing sequencing platforms.
AgriType™ Targeted Genotyping by Sequencing (GBS)
The AgriType™ Targeted Genotyping by Sequencing Solution is designed and developed to address large-scale genotyping projects in agrigenomics (the application of genomics in the field of agriculture).
CleanPlex® Custom AgBio Kit
Design targeted panels tailored to your project’s SNPs, gene families, or potential off-target sites. With fast design turnaround, pilot-to-scale pricing, and support for FFPE or low-quality DNA, CleanPlex custom kits adapt to the unique needs of AgBio research.
Workflow Fit
Panel Design
Select a ready-to-use panel or collaborate with our team to build a custom design that fits your breeding, genome editing, or trait analysis goals.
CleanPlex Library Preparation (~3 hours)
Prepare high-quality libraries quickly with a simple, single-tube workflow optimized for complex agricultural samples.
Sequence & Analyze
Run libraries on widely used sequencing platforms such as Illumina, Ion Torrent and MGI, supported by analysis pipelines customized for variant calling and edit verification.
Read-Depth Guidance and Pipelines
Access guidance and tools that simplify analysis, improving confidence in marker data and CRISPR outcomes.
Customer Proof
“Cut our marker QC time by 60% while improving call rates.”
Senior Scientist, Seed Company“CRISPR edit verification scaled from 24 to 384 samples in one week.”
Group Lead, Plant Genomics LabWhy CleanPlex for AgBio?
CleanPlex panels provide rapid, high-uniformity sequencing solutions for GBS,marker-assisted selection and CRISPR validation. They support complex multiplexed workflows, enabling researchers to analyze thousands of markers or edit sites in a single run.
With compatibility across Illumina and Ion Torrent platforms, CleanPlex fits easily into existing lab infrastructure. Its scalability makes it effective for both pilot studies and high-volume production programs.
