Gene List:
ADSL, ALDH7A1, ALG13, ARHGEF9, ARX, BRAT1, CACNA1A, CASK, CDKL5, CHD2, CLCN4, CLN3, CLN5, CLN6, CLN8, CNTNAP2, CTSD, DEPDC5, DNM1, DOCK7, EEF1A2, FARS2, FOLR1, FOXG1, FRRS1L, GABBR2, GABRA1, GABRB3, GABRG2, GAMT, GNAO1, GRIN1, GRIN2A, GRIN2B, HCN1, HNRNPU, KCNA2, KCNB1, KCNJ10, KCNMA1, KCNQ2, KCNQ3, KCNT1, KCTD7, MBD5, MECP2, MEF2C, MFSD8, NRXN1, PCDH19, PIGA, PIGN, PIGO, PLCB1, PNKP, PNPO, POLG, PPT1, PRRT2, PURA, SCN1A, SCN1B, SCN2A, SCN8A, SCN9A, SLC12A5, SLC13A5, SLC19A3, SLC25A12, SLC25A22, SLC2A1, SLC35A2, SLC6A1, SLC9A6, SMC1A, SPTAN1, ST3GAL3, STX1B, STXBP1, SYNGAP1, SZT2, TBC1D24, TPP1, TSC1, TSC2, WDR45, WWOX

References:
Colin et al. Biallelic Variants in UBA5 Reveal that Disruption of the UFM1 Cascade Can Result in Early-Onset Encephalopathy. Am J Hum Genet. 2016 Sep 1;99(3):695-703.

Epi4K Consortium. De novo mutations in SLC1A2 and CACNA1A are important causes of epileptic encephalopathies. Am. J. Hum. Genet. 99: 287-298, 2016.

Bras et al. Mutations in PNKP cause recessive ataxia with oculomotor apraxia type 4. Am. J. Hum. Genet. 96: 474-479, 2015.

Heron et al. Missense mutations in the sodium-gated potassium channel gene KCNT1 cause severe autosomal dominant nocturnal frontal lobe epilepsy. Nat Genet. 2012;44:1188–90.

Endele et al. Mutations in GRIN2A and GRIN2B encoding regulatory subunits of NMDA receptors cause variable neurodevelopmental phenotypes. Nature Genet. 42: 1021-1026, 2010.

Siekierska et al. Gain-of-function FHF1 mutation causes early-onset epileptic encephalopathy with cerebellar atrophy. Neurology 86: 2162-2170, 2016.

Mirzaa et al. CDKL5 and ARX mutations in males with early-onset epilepsy. Pediatr Neurol. 2013;48:367–377.

Palmer et al. Neuronal deficiency of ARV1 causes an autosomal recessive epileptic encephalopathy. Hum Mol Genet. 2016 Jul 15;25(14):3042-3054.